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A brief history of restriction enzymes

Where they come from, why they have such strange names, and more.
This article reviews the history and nomenclature of restriction enzymes - where they come from and why they have such funny names.

Key terms

TermMeaning
restriction enzymeenzyme that cuts DNA at specific sites
restriction sitesequence that restriction enzyme recognizes and cuts
endonucleaseenzyme that cuts nucleotides within a sequence, rather than from the ends

What are restriction enzymes?

In the early 1950s, scientists noticed that some bacteria were more likely to get infected by viruses than others. Over the next few decades, research revealed that these resistant bacteria had a self-defense mechanism - enzymes that cut DNA into pieces, and so restricted the virus.
These restriction enzymes, or restriction endonucleases, work by recognizing and cutting specific palindromic sequences
within the DNA.

What's in a name?

The first such enzyme to be successfully isolated from bacteria was HindII. Since then, thousands of others have been discovered and studied.
You might have noticed that restriction enzymes seem to have pretty strange names. Why are they such complicated sequences of letters and numbers?
The system for naming these molecules is actually quite informative! Each enzyme is named after the bacterium from which it was isolated.
For example, EcoRI comes from:
AbbreviationMeaningDescription
EEscheriabacterial genus
cocolibacterial species
RRY13bacterial strain
Ifirstorder in which it was found in this bacterium
So, EcoRI was the first enzyme to be isolated from the RY13 strain of E. coli. Similarly, HindII was isolated from the d-strain of Haemophilus influenzae.
You are in charge of naming enzymes. Let's try a few.
test your understanding
The table below lists the details of the discovery of a restriction enzyme in a bacterium.
CategoryInformation
GenusBacillus
Speciesamyloliquefaciens
StrainH
OrderFirst
What would this enzyme be called?
Choose 1 answer:

test your understanding
The table below lists the details of the discovery of a restriction enzyme in a bacterium.
CategoryInformation
GenusStaphylococcus
Speciesaureas
Strain3A
OrderFirst
What would this enzyme be called?
Choose 1 answer:

Let's make up our own restriction enzymes.
let's have some fun!
There is a new type of restriction enzyme that can be found in dragons. One such enzyme is called FbaXV.
What would the scientific name of the dragon it was found in look like?
Choose 1 answer:

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