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The chromosomal basis of inheritance

Thomas Hunt Morgan's experiments. The fruit fly (Drosophila melanogaster) as a model system.

Key points:

  • Boveri and Sutton's chromosome theory of inheritance states that genes are found at specific locations on chromosomes, and that the behavior of chromosomes during meiosis can explain Mendel’s laws of inheritance.
  • Thomas Hunt Morgan, who studied fruit flies, provided the first strong confirmation of the chromosome theory.
  • Morgan discovered a mutation that affected fly eye color. He observed that the mutation was inherited differently by male and female flies.
  • Based on the inheritance pattern, Morgan concluded that the eye color gene must be located on the X chromosome.

Introduction

Where are genes found in a cell? Odds are, you've already heard the punchline: genes lie on chromosomes. You may have even have heard the second punchline, the one that ushered in the modern genetic era: genes are stretches of DNA that specify proteins.
However, these were not always things that you could look up on Khan Academy! When Gregor Mendel began studying heredity in 1843, chromosomes had not yet been observed under a microscope. Only with better microscopes and techniques during the late 1800s could cell biologists begin to stain and observe subcellular structures, seeing what they did during cell divisions (mitosis and meiosis).
Eventually, some scientists began to study Mendel’s long-ignored work and re-evaluate his model in terms of the behavior of chromosomes. Around the turn of the 20th century, the biology community started to make the first tentative connections between chromosomes, meiosis, and the inheritance of genes1.

The chromosome theory of inheritance

Who figured out that genes are on chromosomes? Walter Sutton and Theodor Boveri generally get credit for this insight. Sutton, who was American, studied chromosomes and meiosis in grasshoppers. Boveri, who was German, studied the same things in sea urchins.
In 1902 and 1903, Sutton and Boveri published independent papers proposing what we now call the chromosome theory of inheritance. This theory states that individual genes are found at specific locations on particular chromosomes, and that the behavior of chromosomes during meiosis can explain why genes are inherited according to Mendel’s laws2,3.
Photographs of Walter Sutton, Theodor Boveri, and Thomas Hunt Morgan.
_Modified from "Chromosomal theory of inheritance: Figure 1," by OpenStax College, Biology (CC BY 3.0) and from "Thomas Hunt Morgan," (public domain)._
Observations that support the chromosome theory of inheritance include4:
  • Chromosomes, like Mendel's genes, come in matched (homologous) pairs in an organism. For both genes and chromosomes, one member of the pair comes from the mother and one from the father.
  • The members of a homologous pair separate in meiosis, so each sperm or egg receives just one member. This process mirrors segregation of alleles into gametes in Mendel's law of segregation.
  • The members of different chromosome pairs are sorted into gametes independently of one another in meiosis, just like the alleles of different genes in Mendel's law of independent assortment.
The chromosome theory of inheritance was proposed before there was any direct evidence that traits were carried on chromosomes, and it was controversial at first. In the end, it was confirmed through the work of geneticist Thomas Hunt Morgan and his students, who studied the genetics of fruit flies5.

T. H. Morgan: Fun with fruit flies

Morgan chose the fruit fly, Drosophila melanogaster, for his genetic studies. What fruit flies may lack in charisma (depending on your taste in insects), they make up for in practicality: they're cheap, easy, and fast to grow. You can raise hundreds of them in a little bottle with sugar sludge at the bottom, and many geneticists still do this today!
Image of a fruit fly, photographed from the top.
Image credit: "Drosophila melanogaster - top," by André Karwath (CC BY-SA 2.5).
Morgan's crucial, chromosome theory-verifying experiments began when he found a mutation in a gene affecting fly eye color. This mutation made a fly's eyes white, rather than their normal red.
Unexpectedly, Morgan found that the eye color gene was inherited in different patterns by male and female flies6. Male flies have an X and a Y chromosome (XY), while female flies have two X chromosomes (XX). It didn't take Morgan long to realize that the eye color gene was being inherited in the same pattern as the X chromosome.
This may have come as a surprise to Morgan, who had been a critic of the chromosome theory7!

A "sex limited" inheritance pattern6

What made Morgan think that the eye color gene was on the X chromosome? Let's look at some of his data. The first white-eyed fly he found was male, and when this fly was crossed with normal, red-eyed female flies, the F1 offspring were all red-eyed—telling Morgan that the white allele was recessive. So far, so good, no surprises there.
P generation: red-eyed wild type female crossed with white-eyed male.
F1 generation: all females and males are red-eyed. F1 flies are allowed to interbreed.
F2 generation: consists of flies in a ratio of 2 red eyed females : 1 red-eyed male : 1 white-eyed male.
_Image modified from "Drosophila melanogaster," by Madboy74 (CC0/public domain)._
But when the F1 flies were crossed to each other, something strange happened: all of the female F2 flies were red-eyed, while about half of the male F2 flies were white-eyed. Clearly, the male and female flies were inheriting the trait in different patterns. In fact, they were inheriting it in the same pattern as a particular chromosome, the X.

X marks the spot

Let's see how inheritance of the X chromosome can explain what Morgan saw. Earlier, we said that female flies have an XX genotype and male flies have an XY genotype. If we stick the eye color gene on the X chromosome (writing it as a little subscript, w+ for red and w for white), we can use a Punnett square to show Morgan's first cross:
Punnett square for mating of white-eyed male (XwY) with red-eyed wild type female (Xw+Xw+).
XwY
Xw+Xw+XwXw+Y
Xw+Xw+XwXw+Y
Xw+Xw - red-eyed F1 females Xw+Y - white-eyed F1 males
_Image modified from "Drosophila melanogaster," by Madboy74 (CC0/public domain)._
The predictions match the F1 phenotypes, but this set of phenotypes could also be explained by a gene that is not on the X chromosome, since all the flies were red-eyed (regardless of sex). So the real test comes when the F1 flies are mated to make the F2 generation:
Punnett square for mating of red-eyed F1 male (Xw+Y) with red-eyed, heterozygous F1 female (Xw+Xw).
Xw+Y
Xw+Xw+Xw+Xw+Y
XwXw+XwXwY
Xw+Xw+, Xw+Xw - red-eyed F2 females
XwY - white-eyed F2 males
Xw+Y - white-eyed F2 males
_Image modified from "Drosophila melanogaster," by Madboy74 (CC0/public domain)._
Here is where the X makes the difference. Our Punnett square with the eye color gene on the X chromosomes correctly predicts that all of the female flies will have red eyes, while half of the male flies will have white eyes. The male flies get their only X chromosome from their mother, who is heterozygous (Xw+Xw), leading to the fifty-fifty split of phenotypes.

Confirming the model

Morgan did lots of other experiments to confirm an X chromosome location for the eye color gene. He was careful to rule out alternative possibilities (for instance, that it was simply impossible to get a white-eyed female fruit fly)6.
Pulling together all of his observations, Morgan concluded (correctly) that the gene must lie on, or be very tightly associated with, the X chromosome7,9. A strong confirmation of this conclusion came later, from Morgan's student Calvin Bridges. Bridges showed that rare male or female flies with unexpected eye colors were produced through nondisjunction (failure to separate) of sex chromosomes during meiosis—basically, the exception that proved the rule10,11.
Morgan also found mutations in other genes that were not inherited in a sex-specific pattern. We now know that genes are borne on both sex and non-sex chromosomes, in species from fruit flies to humans.

Want to join the conversation?

  • mr pink red style avatar for user Gabby Werner
    What is another definition for "hemizygous?"
    (17 votes)
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  • leaf green style avatar for user tomcarbone25
    Hello! I dont understand why the mutant is on the X chromosome if we said that it is defining by the sex chromosome?? if it's only for male (XY) and female has both XX, I would predict that the mutant would be on the Y chromosome, which only the male has.
    thnks!
    (8 votes)
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    • piceratops ultimate style avatar for user RowanH
      If the white eye trait was linked to having the Y chromosome, then you would expect that:
      a) all male offspring of white-eyed males had white eyes, because they should all inherit their father's Y chromosome. In actual case they had red eyes though.
      b) It would not be possible to have white eyed females, because they don't have a Y chromosome. However, in the actual case, Morgan performed experiments by crossing females which were offspring of a white-eyed male with another white eyed male, and found you can get white eyed females, so the trait is not linked to the Y chromosome. This suggests the white eyed trait is X-linked but recessive, so females only show this phenotype when they have two copies of it, and no red-eye version.
      Hope that helped!
      (17 votes)
  • duskpin ultimate style avatar for user Ankush Moger
    What if a white eyed male fruit fly (genotype XwY) is crossed with a heterozygous (i.e. with genotype Xw+Xw) female fruit fly?
    Don't we get a white eyed female fruit fly?
    (9 votes)
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  • aqualine seed style avatar for user Toni
    It is stated in the second to the last paragraph that Bridges showed more detail about Morgan's findings wherein he showed that rare male or female flies with the unexpected eye colors were produced through nondisjunction of sex chromosomes during meiosis, and since it is meiosis they should bed divided. What then is left in the cell? Does it have both X and Y? If so what about the other cell that was supposed to inherit the other sex chromosome.
    (5 votes)
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    • piceratops ultimate style avatar for user RowanH
      Bridges found rare flies with surprising inheritance patterns: daughters that inherited X-linked traits (like eye colour) only from their mother, and sons that inherited their X-linked traits from their father. Due to these inheritance patterns he suggested that these daughters were XXY, and the sons were XO (unlike in humans, in drosophila, sex is determined by how many X chromosomes are present, rather than depending on the Y chromosome). His explanation was that nondisjunction had occurred during meiosis in the mother, producing egg cells with XX or no sex chromosomes. When these rare eggs were fertilized by sperm carrying either X or Y, the offspring were the XXY daughters with 2X chromosomes from the mother, and X0 sons inheriting an X from the father (those with XXX and Y0 combinations died). He also looked under a microscope and saw that these were indeed the chromosome combinations that the flies had. This work provided further evidence that inherited traits, which could be studied using the breeding experiments of genetics, are linked to physical chromosomes, that were being studied for example with dyes and microscopy.

      There is more information where I read most of this, here: https://embryo.asu.edu/pages/calvin-bridges-experiments-nondisjunction-evidence-chromosome-theory-heredity-1913-1916
      And here is another interesting article on the chromosome theory, Bridges' contribution, and its impact http://www.genetics.org/content/202/1/15
      (7 votes)
  • blobby green style avatar for user 7imon7ays
    Is this a mistake in the text? Emphasis mine.

    Morgan did lots of other experiments to confirm an X chromosome location for the eye color gene. He was careful to rule out alternative possibilities (for instance, that it was simply impossible to get a white-eyed female fruit fly).

    By mating the F2 files [sic] from the cross above, Morgan was able to obtain white-eyed females, which he then crossed to red-eyed males. All the female offspring of this cross were red-eyed, while all the males were white-eyed.


    Other comments suggest readers are getting thrown off by the contradiction. Personally I can see how a white-eyed female can be born to two parents carrying the recessive allele.
    (5 votes)
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  • leaf red style avatar for user noel56
    where did the first white eyed fly come from?
    if there were no white eyed flys to begin with where did he get the white genotype? Please help.
    (4 votes)
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  • piceratops ultimate style avatar for user Baron rojo
    so whats the role of the cromosome y in the eye color here?
    (2 votes)
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  • marcimus purple style avatar for user maskarinecs
    Why was the idea initially controversial? What did it initially lack?
    (3 votes)
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  • starky sapling style avatar for user Kyla Reburiano
    I thought it wasn't possible t obtain a white-eyed female because of the differing chromosomes in the two sexes?...
    (2 votes)
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    • piceratops ultimate style avatar for user RowanH
      If you breed a homozygous red eyed female with a white eyed male, the female offspring will be heterozygous and have one copy of the mutant allele, even though the eyes are still red. Then if you breed such a female with a white eyed male, some of the female offspring will receive an X chromosome from the mother containing the white mutation, as well as the white mutant allele on the X chromosome from the father. Such females have two mutant copies and no 'normal' alleles to compensate, so would have white eyes.
      (3 votes)
  • blobby green style avatar for user Samirjawhar
    Couldn't we have a White EYE female fruit fly in the F3 Generation ?? PLEASE HELPP
    (2 votes)
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    • leafers ultimate style avatar for user Travis Fisher
      The previous comment is incorrect, the logic is flawed. If a white eyed female required a white eyed female, you would have an infinite regression. You can have a white eyed female in generation 3, by mixing a red eyed female with the white eyed gene with a white eyed male.
      (5 votes)